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SOAPfilter (Galaxy tool version 0.1)

Forward set of reads:

Reverse set of reads:

Filter settings to use:

Default settings are suitable for most data pre-processing needs. If you want full control, use Full parameter list

What it does

Filter removes reads from data based on different criteria such as the presence of adapter sequences and low quality bases. In addition, short reads containing unidentified bases and/or have been affected by PCR duplication can be removed using this tool.

This tool was installed from a ToolShed, you may be able to find additional information by following this link: http://gigatoolshed.net/view/peterli/soapfilter2