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SmileFinder (Galaxy tool version 0.1)
Reducing the number of windows enables SmileFinder to run faster
Lowering this value allows SmileFinder to run faster
This threshold is used to create the report file

What it does

SmileFinder is a tool for detecting signatures of positive selection in population data. It has been tested with data from the Human Genome Diversity Project which can be prepared for use using the Count tool.

SmileFinder will generate two outputs:

  1. SmileFinderCompleteTable. This is the most important table, containing all the percentiles calculated at each marker position.
  2. Report file. It filters the CompleteTable according to the Sensitivity, returning the markers with the oddest values. We recommend users to filter the CompleteTable according to their needs. For example, graphing the percentiles values in a region of interest for vizsualizing the behavior of the genetic diversity.

We hope SmileFinder will be able to provide researchers with more powerful insights about natural selection. Any questions about the program can be addressed to wilfried.guiblet@upr.edu


This tool was installed from a ToolShed, you may be able to find additional information by following this link: http://gigatoolshed.net/view/peterli/smilefinder