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Join two Datasets
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data by a column and perform aggregate operation on other columns.
Genome Diversity
PCA
: Principal Components Analysis of genotype data
BGISOAP
Alignment_mapping
using SOAP2
Alignment_mapping
using SOAP1
SOAPdenovo2
GAGE analysis
- calculate statistics for contigs and scaffolds
ALLPATHS-LG
- assembly of S. aureus and R. sphaeroides datasets
Merge pair
- merges a pair of corrected read libraries
stat
- Extract information from GAGE output
Extract ACGT
from scaffolds
GapCloser 1.12
- close gaps in scaffolds
Corrector HA
- corrects sequencing errors in short reads
KmerFreq HA
- a kmer frequency counter
Corrector AR
- corrects sequencing errors in short reads
KmerFreq AR
- a kmer frequency counter
SOAPfilter
- removes reads with artefacts
SOAPdenovo2
SOAPdenovo1
GapCloser 1.10
- close gaps in scaffolds
Corrector1
- corrects sequencing errors in short reads
KmerFreq1
- a kmer frequency counter
SOAPdenovo1
Smilefinder
grapher
- displays results from Smilefinder
SmileFinder
- detect signatures of positive selection in genomes
Count
- prepare HGDP data for SmileFinder
Select populations
for analysis
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